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Online molecule Games
Cyto-Life Game

Plays: 15119
Category: Action Games
Game evolution micro organism
Elementris Game

Plays: 13553
Category: Puzzles Games
A simple puzzle game where you build larger and larger molecules out of component atoms. And you might learn a bit about organic chemistry in the process, as recognized molecules are described.
Atomix Game

Plays: 11655
Category: Puzzles Games
The object of the game is to assemble molecules from compound atoms by sliding the atoms around. This has to be done in a set time limit for each level. The screen contains a small preview window showing what each molecule should look like. The tile-based playing field contains a number of atom blocks, as well as walls. You can move an atom around by selecting it, and moving it up, down, left, or right.
Atomic Puzzle 2 (distribution) Game

Plays: 6803
Category: Puzzles Games
Clear each level by removing the atoms in the correct order. Can you predict the merging of the molecules so that there’s none left at the end of each level?
Atomix Reloaded Game

Plays: 3662
Category: BoardGame Games
Atomix Reloaded with great graphics and 32 unique new levels! The object of the game is to assemble molecules from compound atoms by sliding the atoms around.
Jigsaw: War molecule machines Game

Plays: 3305
Category: BoardGame Games
Use mouse to click and exchange pieces together.
Chemistry Game

Plays: 2633
Category: Education Games
Match molecules to prove you are a master chemist in this addictive puzzle game from Evolute Games! Beat your friends scores and earn achievement awards over 48 mind churning levels with 12 bonus levels to really scratch your head over. Every level comes with interesting chemistry facts, meaning Chemistry is educational as well as fun. Have you got enough Chemistry?
Extreme Atoms Game

Plays: 1615
Category: Puzzles Games
Train your brain! Connect the atoms correctly to a useful molecule! Try to use as less steps as you can to achieve the best score!

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Tips: For things like scopes or hands which are either on or can go to the edge of the screen you should go to Player|Advanced and change the Bounds parameter to around 10 or so. This will give you a point based bounding box instead of a auto bounding box.